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RE: Database corrupt - cannot allocate space after upgrade to R6 ~Dean Chukisterflar 24.Jan.04 05:04 PM a Web browser Domino Server 6.0.3Windows 2000, Windows XP
We had this same issue after upgrading our environment from 5.0.7 to 6.5. The final solution was to upgrade all mail files to ODS43. According to Lotus support, there was probably some minor data corruption there before the upgrade that R5 wasn't picking up on. And R6 was now seeing it but could not deal with it properly unless the db was ODS43.
So if you are planning to upgrade from R5, I would go right to ODS43 instead of waiting. You can always convert back if need be.